2013
DOI: 10.1159/000351081
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Specific Nucleotide Changes in the Subgenomic Promoter Region Influence Infectivity of the Sindbis Virus

Abstract: Transcription of the subgenomic mRNA of Sindbis virus (SINV) is initiated at a subgenomic promoter (SP). Alignment of SINV sequences identified a 68-nucleotide conserved domain spanning -19 to +49 relative to the subgenomic mRNA start site. Nucleotide T or C is present at -18 or +49 in all known SINVs while a Sindbis-like virus XJ-160 has an A or T at a corresponding position. Our results indicate that deletion or substitution of the T at +49 decreased the activity of SP, while substituting T for A at -18 did … Show more

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“…Since conserved sequence elements (CSEs) have important roles in the lifecycle of alphaviruses (Fayzulin and Frolov, 2004;Hyde et al, 2015;Niesters and Strauss, 1990;Zhu et al, 2013), we investigated the sequence identities of CSEs with other defined alphaviruses. The CSEs of MWAV within the nsP1 51 nt, subgenomic promoter sequence and the 3'-UTR shared more than 90% nt sequence identities with EILV and TALV (Fig.…”
Section: Main Textmentioning
confidence: 99%
“…Since conserved sequence elements (CSEs) have important roles in the lifecycle of alphaviruses (Fayzulin and Frolov, 2004;Hyde et al, 2015;Niesters and Strauss, 1990;Zhu et al, 2013), we investigated the sequence identities of CSEs with other defined alphaviruses. The CSEs of MWAV within the nsP1 51 nt, subgenomic promoter sequence and the 3'-UTR shared more than 90% nt sequence identities with EILV and TALV (Fig.…”
Section: Main Textmentioning
confidence: 99%