Gold- and silver nanoparticles (Au NPs and Ag NPs)-based colorimetric detection of specific analytes has attracted intense research interest and is still in great demand. The majority of Au NPs- and Ag NPs-based sensory reports have revealed that, during the analyte recognition, dispersed NPs typically aggregated and displayed color changes from wine-red to blue/purple and yellow to orange/brown, respectively. On the other hand, only a few reports demonstrated that the aggregated Au NPs and Ag NPs underwent anti-aggregation in the presence of certain analytes, which displayed reversed color changes from blue/purple to wine-red and orange/brown to yellow, correspondingly. There are some examples of anti-aggregation phenomena mentioned in a vast number of studies on Au NPs- and Ag NPs-based colorimetric sensors via NP aggregation. However, a review targeting the anti-aggregation-enabled Au NPs- and Ag NPs-based colorimetric sensing of diverse analytes is not yet available. In this review, anti-aggregation-facilitated Au NPs- and Ag NPs-based colorimetric detection of metal ions, anions, bio-analytes, pesticides, and herbicides is delivered with detailed underlying mechanisms. Moreover, the probe design, sensory requirement, merits, limitations, and future scope of anti-aggregation-enabled Au NPs- and Ag NPs-based colorimetric sensors are discussed.