Aims: To assess cognitive function in school age children with congenital pituitary hormone deficiency (PHD). Methods: Ten children with PHD (aged 6.0-15.6 years, mean 11.5 years) and sibling controls (aged 8.7-14.9 years, mean 12.1 years) were assessed using the Wechsler Intelligence Scale for Children (WISC-III UK). Results: The patients' full scale IQ scores were all below average (mean 75, 95% CI 70-80), but were not significantly different to those of sibling controls (mean 82, 95% CI 75-89). There was no difference in verbal IQ between patients and siblings, but performance IQ was significantly reduced (mean 75, 95% CI 68-82 in patients; mean 88, 95% CI 80-96 in sibling controls). The reduced performance IQ reflected a poorer performance in tasks assessing perceptual organisational skills. Conclusions: Data suggest that children with PHD have an IQ that is below average when compared to the population norm and a reduced performance IQ when compared to sibling controls. This may reflect abnormal brain development or could be linked to the impact of hypoglycaemia or low thyroxine concentrations in early life. This information is of value when counselling parents and planning a child's care and education, although further, more extensive studies of patients and siblings are required.C hildren with congenital pituitary hormone deficiency (PHD) have quantitative and qualitative abnormalities of pituitary hormone production. Many have midline CNS abnormalities on magnetic resonance imaging (MRI) that can include an abnormal pituitary gland and/or hypothalamus, absent septum pellucidum, and optic nerve hypoplasia. This picture can be viewed as a spectrum of hormonal and associated midline abnormalities ranging from isolated growth hormone deficiency with normal MR images through to septo-optic dysplasia (absent septum pellucidum and optic nerve hypoplasia) with associated multiple pituitary hormone deficiency (MPHD).