The mutational specificity and genetic requirements for mutagenesis by 5,6-dihydroxy-5,6-dihydrothymine (thymine glycol), one ofthe principal DNA lesions induced by oxidation and ionizing radiation, has been investigated in Escherichia coli. Thymine glycol was positioned at a unique site in the single-stranded genome of a bacteriophage M13mpl9 derivative. Replication of the genome in E. coli yielded targeted mutations at a frequency of 0.3%; the mutations were exclusively T -* C. Mutagenesis was independent of SOS and nth (nth encodes endonuclease Ill, a thymine glycol repair enzyme). The adduct was not detectably mutagenic in duplex DNA. A chemical rationalization for the mutation observed for thymine glycol was developed by applying molecular modeling and molecular mechanical calculations to the same DNA sequence studied in vivo. Modeling suggested that the 5R,6S isomer of cis-thymine glycol, when not base paired, was displaced laterally by -0.5 A toward the major groove in comparison to the position that thymine would otherwise occupy. This perturbation of DNA structure should increase the likelihood of a guanine-thymine glycol wobble base pair during replication, which would explain the mutational specificity ofthe base observed in the genetic experiments.The hydroxyl radical is the principal reactive species responsible for DNA damage by ionizing radiation in aerated aqueous solution (1-3). This and other reactive oxygen species are also generated in vivo during normal metabolism (3, 4). Despite some differences, the DNA damages produced by ionizing radiation and cellular oxidation are qualitatively similar (5), with thymine bases being most susceptible to modification (6, 7). The major stable product of thymine modification in vitro and in vivo is 5,6-dihydroxy-5,6-dihydrothymine (thymine glycol or t'; predominantly the cis isomers) (7,8). Several studies have shown that t' inhibits DNA synthesis in vitro in most sequences (9-12), although certain local contexts allow DNA polymerases to bypass the lesion (12).The mutational specificity of ionizing radiation has been studied in bacteria and in mammalian cells (13)(14)(15)(16)(17)(18)(19). Base substitutions are the most frequently detected mutational event and, although there is no specificity for any one substitution, most studies agree that the major mutational change is the G-C A-T transition. However, it is estimated that '40% of all ionizing radiation-induced mutations in Escherichia coli occur at AT sites.$ Moreover, Salmonella typhimurium strains with deletions in oxyR, a gene that positively controls a regulon affording protection against oxidative damage, exhibit a marked enhancement of spontaneous mutations such as T-A --AT transversions (20). Together, these data show that a significant fraction of oxidant-and radiation-induced mutations occurs at A-T base pairs, and it was the goal of our work to determine the contribution of t' to this component of the mutational spectrum.MATERIALS AND METHODS Materials. E. coli strain MM294A (lac') was...