The monitoring and control of thermo-hygrometric indoor conditions is necessary for an adequate preservation of cultural heritage. The European standard EN 15757:2010 specifies a procedure for determining if seasonal patterns of relative humidity (RH) and temperature are adequate for the long-term preservation of hygroscopic materials on display at museums, archives, libraries or heritage buildings. This procedure is based on the characterization of the seasonal patterns and the calculation of certain control limits, so that it is possible to assess whether certain changes in the microclimate can be harmful for the preventive conservation of artworks, which would lead to the implementation of corrective actions. In order to discuss the application of this standard, 27 autonomous data-loggers were located in different points at the Archaeological Museum of l’Almoina (Valencia). The HVAC system (heating, ventilation and air conditioning) at the museum tries to reach certain homogeneous environment, which becomes a challenge because parts of the ruins are covered by a skylight that produces a greenhouse effect in summer, resulting in severe thermo-hygrometric gradients. Based on the analysis of temperatures recorded during 16 months, the air conditions in this museum are discussed according to the standard EN 15757:2010, and some corrective measures are proposed to improve the conservation conditions. Although this standard is basically intended for data recorded from a single sensor, an alternative approach proposed in this work is to find zones inside the museum with a homogeneous microclimate and to discuss next the average values collected in each area. A methodology is presented to optimize the application of this standard in places with a complex microclimate like this case, when multiple sensors are located at different positions.