Spectrally accurate quantitative analysis of isotope‐labeled compounds

Abstract

Calculated profile mode mass spectrometry (MS) data are fitted to lineshape‐calibrated liquid chromatography LC/MS data using a Multiple Linear Regression (MLR) model to quantitate the relative concentrations of stable or radiolabeled compound mixtures. This alternative approach significantly improves the precision and accuracy over existing MS methods while providing the much‐needed statistical diagnostics on the goodness‐of‐fit model and thus reliability of the quantitative results obtained. Test compound data containing S/Cl atoms have been measured with either stable deuterium labeling or radioisotope uniform 14C labeling onto an aromatic ring. Since the entire relative distribution of variously labeled compounds is automatically obtained through this approach, it is feasible to directly calculate the Specific Activity (SA) from such mass spectral analysis without radioactivity detection and the usual standard curve quantitation. The applicability of this approach to systematically and accurately accommodate and account for incomplete labeling chemistry or other impurities is also discussed, with wide‐ranging implications including metabolic flux, HDX (Hydrogen/Deuterium Exchange), and quantitative proteomics.

Metabolically-incorporated deuterium in myelin localized by neutron diffraction and identified by mass spectrometry

“…In our current study, the conditions we used for analyzing the lipids were not sufficient to detect cholesterol, a major myelin constituent, which is usually cationized via alkaline hydrolysis and detected, for example, as ammoniated, lithiated, or sodiated adducts ( West and Reid, 2021 ). Spectral accuracy of our original data was determined using MassWorks (Version 6,0,0,0) software from Cerno Bioscience (LasVegas, NV 89144) ( Wang and Gu, 2010 ; Kuehl et al., 2021 ). (The MassWorks software also corrected automatically for the presence in the deuterated lipids of the natural isotope abundance that was detected in the non-deuterated samples (H-dam and H-pup spectra, see below).…”

Metabolically-Incorporated Deuterium in Myelin Localized by Neutron Diffraction and Identified by Mass Spectrometry

“…In our current study, the conditions we used for analyzing the lipids were not sufficient to detect cholesterol, a major myelin constituent, which is usually cationized via alkaline hydrolysis and detected, for example, as ammoniated, lithiated, or sodiated adducts [33]. Spectral accuracy of our original data was determined using MassWorks (Version 6,0,0,0) software from Cerno Bioscience (LasVegas, NV 89144) [34,35]. (The MassWorks software also corrected automatically for the presence in the deuterated lipids of the natural isotope abundance that was detected in the non-deuterated samples (H-dam and H-pup spectra, see below).…”