1. Different types of bacteriorhodopsin chromophores and their reactions are described. This includes intermediates of the reconstitution reaction of the purple complex, intermediates of the photochemical cycle and a photochemically active 500-nm chromophore. In contrast to the native chromophore (purple complex) some of these species are reducible by borohydride yielding stable retinyl proteins.2. Hydrolysis and/or extraction of the retinyl proteins reveals that in the corresponding non reduced parent chromophores the retinal is bound either noncovalently or covalently to lysyl residues of the polypeptide chain.3. Retinol, retinyl lysine and their retro isomers isolated from the various reduced chromophores are identified by thin-layer chromatography and mass spectrometry.4. The absorption spectra of the retinyl proteins and binding studies with retinol and retinal indicate that the cyclohexene ring and the side chain of the retinyl moiety are forced into a coplanar conformation by interaction with the protein. The three peaked absorption band of the reduced chromophores is due to this planarized conformation and not to a retro configuration of the retinyl moiety.5. Isomerization to retro compounds can be achieved by HCl as is known to be the case for retinyl compounds in solution. In addition photochemical isomerization is observed in the case of planarized retinyl moieties. Thus the native protein structure is responsible not only for a specific conformation of the retinyl moiety but also for its specific reactivity.The retinal-protein complex bacteriorhodopsin has been shown to mediate light-energy conversion in halobacteria. Its properties and its function have recently been reviewed [l]. Light absorption by the chromophore (purple complex) of bacteriorhodopsin results in a series of spectral changes composing a photochemical cycle which is accompanied by a vectorial release and uptake of protons. As a result an electrochemical proton gradient across the cell membrane is established [2,3], which can drive ATP synthesis [4-61 and transport processes [7,8].The purple complex absorbs maximally around 560 nm, whereas retinal in solution has a A, , , value around 370 nm. The strong bathochromic shift 190 nm) apparently is due to a specific retinal-protein interaction. The exact chemical structure of the purple complex, however, is not known. One is reminded of the futile attempts to elucidate the chemical structure of the chromophores in other retinalprotein complexes (e.g. the rhodopsins), even though many suggestions for their structure have been made over the years [9]. The importance of a precise knowledge of the chromophore structure and its changes upon light absorption is evident because the chromophore mediates the physiological function of all retinal-protein complexes as photoreceptors. In the special case of bacteriorhodopsin the understanding of the chromophore structure and its lightinduced changes will be the basis for our understanding of the active proton transport process coupled to it. Unfortun...