To provide a framework for understanding the hyperthermostability of some rubredoxins, a comprehensive analysis of the thermally induced denaturation of rubredoxin~Rd! from the mesophile, Clostridium pasteurianum was undertaken. Rds with three different metals in its M~SCys! 4 site~M ϭ Fe 3ϩ02ϩ , Zn 2ϩ , or Cd 2ϩ ! were examined. Kinetics of metal ion release were monitored anaerobically at several fixed temperatures between 40 and 100 8C, and during progressive heating of the iron-containing protein. Both methods gave a thermal stability of metal binding in the order Fe 2ϩ Ͻ Ͻ Fe 3ϩ Ͻ Zn 2ϩ Ͻ Cd 2ϩ . The temperature at which half of the iron was released from the protein in temperature ramp experiments was 69 8C for Fe 2ϩ Rd and 83 8C for Fe 3ϩ Rd. Temperature-dependent changes in the protein structure were monitored by differential scanning calorimetry, tryptophan fluorescence, binding of a fluorescent hydrophobic probe, and 1 H NMR. Major but reversible structural changes, consisting of swelling of the hydrophobic core and opening of a loop region, were found to occur at temperatures~50-70 8C! much lower than those required for loss of the metal ion. For the three divalent metal ions, the results suggest that the onset of the reversible, lower-temperature structural changes is dependent on the size of the MS 4 site, whereas the final, irreversible loss of metal ion is dependent on the inherent M-SCys bond strength. In the case of Fe 3ϩ Rd, stoichiometric Fe 3ϩ 0cysteine-ligand redox chemistry also occurs during metal ion loss. The results indicate that thermally induced unfolding of the native Cp Rd must surmount a significant kinetic barrier caused by stabilizing interactions both within the protein and within the M~SCys! 4 site.