Abstract.We investigate geometric resonances in Bose-Einstein condensates by solving the underlying time-dependent Gross-Pitaevskii (GP) equation for systems with two-and three-body interactions in an axially-symmetric harmonic trap. To this end, we use a recently developed analytical method [Vidanović I et al 2011 Phys. Rev. A 84 013618], based on both a perturbative expansion and a Poincaré-Lindstedt analysis of a Gaussian variational approach, as well as a detailed numerical study of a set of ordinary differential equations for variational parameters. By changing the anisotropy of the confining potential, we numerically observe and analytically describe strong nonlinear effects: shifts in the frequencies and mode coupling of collective modes, as well as resonances. Furthermore, we discuss in detail the stability of a Bose-Einstein condensate in the presence of an attractive two-body interaction and a repulsive threebody interaction. In particular, we show that a small repulsive three-body interaction is able to significantly extend the stability region of the condensate.