Lysophospholipid Receptors 2013
DOI: 10.1002/9781118531426.ch9
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Sphingosine Kinases: Biochemistry, Regulation, and Roles

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“…Therefore, we employed homology modeling to predict the structure of the ATP-binding pocket of SK1 using the solved structures of two bacterial lipid kinases, DgkB [29] and YegS [30] that, while possessing little overall sequence similarity to SK1, do show some sequence similarity with residues proposed to contribute to ATP binding in SK1 [1, 28, 31] (Supplementary Figure 1). In the model (Figure 1A), residues from all five regions highly conserved in the SKs (Motifs 1–5; Supplementary Figure 1) were involved in forming the ATP-binding pocket of SK1, with the 79 SGDGLMHE 86 motif forming the centre of the pocket.…”
Section: Resultsmentioning
confidence: 99%
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“…Therefore, we employed homology modeling to predict the structure of the ATP-binding pocket of SK1 using the solved structures of two bacterial lipid kinases, DgkB [29] and YegS [30] that, while possessing little overall sequence similarity to SK1, do show some sequence similarity with residues proposed to contribute to ATP binding in SK1 [1, 28, 31] (Supplementary Figure 1). In the model (Figure 1A), residues from all five regions highly conserved in the SKs (Motifs 1–5; Supplementary Figure 1) were involved in forming the ATP-binding pocket of SK1, with the 79 SGDGLMHE 86 motif forming the centre of the pocket.…”
Section: Resultsmentioning
confidence: 99%
“…Notably, unlike some other recently developed SK inhibitors [26], comparable inhibition of murine SK1 and SK2 was also observed (Figure 1F). We also examined the inhibitory activity of MP-A08 against the related human lipid kinases, diacylglycerol kinase (DAGK) and ceramide kinase (CERK), which both show considerable polypeptide sequence similarity to the SKs in most of the conserved regions involved in forming the ATP-binding pocket [31] (Motifs 1–5). Notably, MP-A08 showed no inhibition of human DAGK, and only weakly inhibited CERK when employed at 192 μM (Figure 1F).…”
Section: Resultsmentioning
confidence: 99%