The 26-residue peptide of sequence KEALYILMVLGFFGFFTLGILSYIR, which contains the single putative transmembrane domain of a small protein that is associated with slow voltage-gated K+ channels, has been incorporated in bilayers of dimyristoylphosphatidylcholine by dialysis from 2-chloroethanol to form complexes of homogeneous lipidpeptide ratio. Fourier transform infrared spectroscopy indicates that the peptide is integrated in the lipid bilayer wholly in a @-sheet conformation. The electron spin resonance spectra of spin-labeled lipids in the lipidpeptide complexes contain a component corresponding to lipids whose chains are motionally restricted in a manner similar to those of lipids at the hydrophobic surface of integral transmembrane proteins. From the dependence of the lipid spin label spectra on the lipidpeptide ratio of the complexes, it is found that ca. 2.5 lipids per peptide monomer, independent of the species of spin-labeled lipid, are motionally restricted by direct interaction with the peptide in the bilayer. This value would be consistent with, e.g., a @-barrel structure for the peptide in which the @-strands either are strongly tilted or have a reverse turn at their center. A preferential selectivity of interaction with the peptide is observed for the negatively charged spin-labeled lipids phosphatidic acid, stearic acid, and phosphatidylserine, which indicates close proximity of the positively charged residues at the peptide termini to the lipid headgroups. The saturation-transfer electron spin resonance spectra of the peptide spin-labeled at a cysteine residue replacing Leu18 evidence rather slow rotational diffusion in the lipid complexes. This indicates that the presumably enclosed @-sheet units of the peptide are aggregated in oligomeric assemblies in the lipid bilayer. The results suggest a way in which one type of channel unit may be integrated in the membrane.Ion channels are generally large, often multimeric, proteins containing many transmembrane segments (Stephenson, 1991). In spite of the molecular complexity, it is likely that the channel itself is lined with a limited range of, possibly homologous, transmembrane segments. Correlating with thls, it is found that certain relatively short synthetic peptides, of sequences resembling those of putative pore-lining segments, are able to sustain channel activity when incorporated in lipid bilayers (Montal, 1990;Ben-Efraim et al., 1993). Such synthetic peptides are therefore suitable models for studying particular aspects of channel structure and assembly by using biophysical or biochemical techniques. The direct relevance to native channels depends, of course, on the correct identification of the pore-lining transmembrane segments.In addition to the complex channel proteins mentioned above, the DNA clone encoding a small protein associated with a slowly activating voltage-gated potassium channel has been identified in rat kidney (Takumi et al., 1988). This protein, Z s~, contains only 130 amino acids with a single putative 23-residu...