All carbon materials, e.g., amorphous carbon (a-C) coatings and C 60 fullerene thin films, play an important role in short wavelength free-electron laser (FEL) research motivated by FEL optics development and prospective nanotechnology applications. Responses of a-C and C 60 layers to the * Corresponding author: nikita.medvedev@fzu.cz Published in Phys. Rev. B 96, 214101 (2017) , DOI: https://doi.org/10.1103/PhysRevB.96.214101 2 extreme ultraviolet (SCSS: SPring-8 Compact SASE Source in Japan) and soft X-ray (FLASH: Freeelectron LASer in Hamburg) free-electron laser radiation are investigated by Raman spectroscopy, differential interference contrast and atomic force microscopy. A remarkable difference in the behavior of covalent (a-C) and molecular (C 60 ) carbonaceous solids is demonstrated under these irradiation conditions. Low thresholds for ablation of a fullerene crystal (estimated to be around 0.15 eV/atom for C 60 vs 0.9 eV/atom for a-C in terms of the absorbed dose) are caused by a low cohesive energy of fullerene crystals. An efficient mechanism of the removal of intact C 60 molecules from the irradiated crystal due to Coulomb repulsion of fullerene-cage cation radicals formed by the ionizing radiation is revealed by a detailed modeling.