The European sturgeon, Acipenser sturio, is a highly endangered species that almost disappeared in the last decades. Thanks to yearly restocking of the population, this species is still found in the Gironde estuary (France), where juveniles grow during several years before leaving to the ocean. The aim of this study was to evaluate the pressure exerted on these fish by known organic and inorganic contaminants during their stay at the Gironde estuary, and to get information on the fish's health in this context. Monthly captures over the year 2014, provided 87 fish from the cohorts 2012 and 2013 mainly, and from cohorts 2008, 2009 and 2011, all fish born in hatchery. We report the very first analyses of contaminant levels and of biological markers measured in the blood of these fish. Low inorganic contamination was found, composed of seven metals mainly: Zn (< 5 µg.mL-1), Fe (< 1.5 µg.mL-1), Cu (< 0.8 µg.mL-1), Se (< 0.8 µg.mL-1), As (< 0.25 µg.mL-1), Co (< 0.14 µg.mL-1) and Mn (< 0.03 µg.mL-1). Concerning persistent organic contaminants, the sum of 7 PCBs varied from 1 to 10 ng.g-1 plasma, that of 8 OCPs from 0.1 to 1 ng.g-1 , and that of 8 PBDEs from 10 to 100 pg.g-1. Higher levels of contaminants were measured during spring as compared to summer. The sex steroid hormone plasma levels (estradiol, testosterone and 11ketotestosterone) were quite low, which 2 was predictable for juveniles. The transcription of reproduction-involved genes (EstR, AR, LHR, sox9) in blood cells was demonstrated for the first time. Some of them were correlated to organic contaminant levels PCBs and OCPs. Other gene transcriptions (sodCu and bax) were correlated to PCBs and OCPs. However, the DNA damage level measured here as comet tail DNA and micronuclei ratio in red blood cells, were in the very low range of the values commonly obtained in fish from pristine areas. The data presented here can serve as a reference base for future monitoring of this population of sturgeons.