We studied the effects of substrate temperature (Ts) on the surface roughness, resistivity (ρ), mobility (μ), charge carrier concentrations (n), transmission and optical bandgap (Eg) of amorphous In-Ga-Zn-O thin films (∼250 nm thickness) deposited by radio-frequency magnetron sputtering. As Ts increased from RT to 300°C, n increased (2.6 × 1019 → 5.0 × 1019 /cm3), ρ decreased (7.0 × 10−3 → 4.7 × 10−3 Ω−cm), and Eg (3.9 → 3.7 eV) along with the average transmission (89 → 82%) in the visible region decreased. Investigation of the O 1s core level and the Ga 3d, In 4d, and Zn 3d shallow-core levels spectra obtained by high-resolution X-ray photoelectron spectroscopy revealed that as Ts increased, an O 1s component representing the oxygen vacancies increased in amount and that the intensity ratio of In/Ga increased but that of Zn/Ga decreased. The analysis suggests that the increase of oxygen vacancies could explain the increase of charge carrier concentration and that the compositional change could explain the change of Eg.