Abstract. We study the effects of rotation on the quasi normal modes (QNMs) of a newly born proto neutron star (PNS) at different evolutionary stages, until it becomes a cold neutron star (NS). We use the Cowling approximation, neglecting spacetime perturbations, and consider different models of evolving PNS. The frequencies of the modes of a PNS are considerably lower than those of a cold NS, and are further lowered by rotation; consequently, if QNMs were excited in a sufficiently energetic process, they would radiate waves that could be more easily detectable by resonant-mass and interferometric detectors than those emitted by a cold NS. We find that for high rotation rates, some of the g-modes become unstable via the CFS instability; however, this instability is likely to be suppressed by competing mechanisms before emitting a significant amount of gravitational waves.