Organic small molecular semiconductors have been promising candidate for the future electronic materials and devices, and their charge transport potentials have been expected to catch-up and surpass the benchmark one in Si -the giant in the semiconductor materials.As represented in the mobility values observed in graphene with > 10 4 cm 2 V -1 s -1 , the extended -conjugated electron systems provide highly conductive platforms for electrons and holes, however the charge transport in aggregates of conjugated small molecules is disturbed by inter-molecular thermal fluctuations, resulting in the lower mobility of charge carriers in the molecular systems. We have developed a novel assessment technique of charge carrier mobility on the nanoscale molecular aggregates, referred to as time-resolved microwave conductivity (TRMC) measurement, where the non-contact approach minimizes the inter-aggregates issues in the conventional assessment techniques. Particularly, the combination of TRMC with transient absorption spectroscopy (TAS) realizes herein fully experimental non-contact measurement of mobility in supramolecular architectures without structural modulation of the archtectures in the device fabrication protocols. Electron mobility observed in one-dimensional naphthalenediimide (NDI) stacking structures was determined as -,1D = 10 -3 -10 -4 cm 2 V -1 s -1 based on the values of photoconductivity and photo-carrier generation yield determined by TRMC and TAS, respectively. The NDI stacked structures with a variety of inter-molecular interactions were systematically examined by the combined spectroscopy systems, revealing the remarkable impact of interactions stabilizing the stacking structures on the mobility values.