Micrometer-sized spherical aggregates of Sn and Co components containing core-shell, yolk-shell, hollow nanospheres are synthesized by applying nanoscale Kirkendall diffusion in the large-scale spray drying process. The Sn Co -Co SnC -C composite microspheres uniformly dispersed with Sn Co -Co SnC mixed nanocrystals are formed by the first-step reduction of spray-dried precursor powders at 900 °C. The second-step oxidation process transforms the Sn Co -Co SnC -C composite into the porous microsphere composed of Sn-Sn Co @CoSnO -Co O core-shell, Sn-Sn Co @CoSnO -Co O yolk-shell, and CoSnO -Co O hollow nanospheres at 300, 400, and 500 °C, respectively. The discharge capacity of the microspheres with Sn-Sn Co @CoSnO -Co O core-shell, Sn-Sn Co @CoSnO -Co O yolk-shell, and CoSnO -Co O hollow nanospheres for the 200 cycle at a current density of 1 A g is 1265, 987, and 569 mA h g , respectively. The ultrafine primary nanoparticles with a core-shell structure improve the structural stability of the porous-structured microspheres during repeated lithium insertion and desertion processes. The porous Sn-Sn Co @CoSnO -Co O microspheres with core-shell primary nanoparticles show excellent cycling and rate performances as anode materials for lithium-ion batteries.