Recombinant proteins directed to the secretory pathway in plants require a signal peptide for entry into the endoplasmic reticulum. In the absence of further targeting information, such proteins are generally secreted via the default pathway to the apoplast. This has been well documented in protoplasts and leaf tissue, but the trafficking of recombinant proteins in seeds and other storage tissues has rarely been investigated. We used Aspergillus niger phytase as a model glycoprotein to compare the intracellular fate of a recombinant protein in the leaves and seeds of rice (Oryza sativa). Using fluorescence and electron microscopy we showed that the recombinant protein was efficiently secreted from leaf cells as expected. In contrast, within endosperm cells it was retained in endoplasmic reticulum-derived prolamin bodies and protein storage vacuoles. Consistent with our immunolocalization data, the phytase produced in endosperm cells possessed oligomannose and vacuolar-type N-glycans [Man 3 (Xyl)(Fuc)GlcNAc 2 ], whereas the phytase produced in leaves contained predominantly secretion-type N-glycans [GlcNAc 2 Man 3 (Xyl)(Fuc)GlcNAc 2 ]. The latter could not be detected in preparations of the endosperm-derived phytase. Our results show that the intracellular deposition and modification of a recombinant protein is tissue dependent.In eukaryotic cells, polypeptides destined for the secretory pathway contain a short N-terminal transit signal peptide, which facilitates cotranslational import into the endoplasmic reticulum (ER). Such proteins may then be secreted to the cell surface or directed to intracellular domains of the endomembrane system. In the latter case, further positive sorting information is deemed necessary. For example, three different categories of signals are known to direct proteins to vacuolar compartments and these may comprise short peptide tags or structural information rather than a peptide sequence (Neuhaus and Rogers, 1998). In the absence of any sorting information, it is generally accepted that proteins in the plant endomembrane system follow the default pathway and are secreted to the apoplast (Denecke et al., 1990).For glycoproteins, the subcellular destination and the path taken by the protein through the endomembrane system determine the final structure of N-glycan moieties. In the first stage of N-glycosylation (that takes place in the ER), the precursor oligosaccharide Glc 3 Man 9 GlcNAc 2 is cotranslationally added to the protein. As the protein moves through the endomembrane system, this core is modified by various glycosidases and glycosyltransferases to form the final glycan structure (Lis and Sharon, 1993;Lerouge et al., 1998). ER-resident glycoproteins contain high Mantype N-glycans whereas proteins passing though the plant Golgi apparatus contain complex-type N-glycans that are mainly characterized by the presence of a(1-3) Fuc and/or b(1-2) Xyl. These residues are linked to the proximal N-acetyl glucosamine and the b-Man residues of the core (Lerouge et al., 1998). While secrete...