“…Shotgun metagenome and metatranscriptome sequencing, and metaproteomic and metabolomic analyses, stable-isotope probing, as well as full genomes of the isolates, have made it possible to perform thorough and precise in situ assessments of the structures and metabolic functions of the rumen microbiome (Shi et al, 2014;Estes et al, 2018;Stewart et al, 2018;Shakya et al, 2019;Wilkinson et al, 2020;van Cleef et al, 2021van Cleef et al, , 2022. The recently developed technology to rapidly generate full genome sequences from metagenomic DNA samples, namely metagenome-assembled genomes or MAGs (Tyson et al, 2004;Almeida et al, 2019;Nayfach et al, 2019;Youngblut et al, 2020;Haryono et al, 2022) has been extended to studies on rumen microbiome (Solden et al, 2018;Stewart et al, 2018Stewart et al, , 2019Wilkinson et al, 2020;Xie et al, 2021) and it allows the assignment of potential metabolic capabilities and in situ roles to microbes that have not even been obtained in pure or enrichment cultures.…”