Partitioning ecosystem evapotranspiration (ET) into soil evaporation (E) and transpiration (T) is crucial for understanding hydrological processes. In this study, by using high-frequency isotope measurements and continuous surface water measurements, we investigated the isotope ratios in soil-vegetationatmosphere transfer and the physical mechanisms involved over a paddy field for a full growing season. The isotopic signals of d ET , d T , and d E were determined by the Keeling plot method, surface water isotopic measurements, and the Craig-Gordon model, respectively. The fraction of transpiration in evapotranspiration (FT) ranged from 0.2 to 1, with an almost continuous increase in the early growing season and a relatively constant value close to 1 later in the year. The result was supported by FT derived from simulated T and eddy correlation measured ET. The seasonal change in the transpiration fraction could be described quite well as a function of the LAI (FT 5 0.67LAI 0.25 , R 2 5 0.80), implying that transpiration plays a dominant role in the soil-vegetation-atmosphere continuum during the growing season. The two end-member uncertainty analysis suggested that further improvement in the estimation of d T and d ET is necessary for partitioning evapotranspiration using the isotopic method. In the estimation of d ET , the assumptions underlying Keeling plot method were rarely met and the uncertainty was quite large. A high frequency of precise isotopic measurements in surface water was also necessary for d T estimation. Furthermore, special care must be taken concerning the kinetic fractionation parameter in the Craig and Gordon Equation for d E estimation under low-LAI conditions. The results demonstrated the robustness of using isotope measurements for partitioning evapotranspiration.