“…In the following, we demonstrate how pairwise correlation functions can be calculated either analytically or to a high degree of numerical certainty for an arbitrary HMM and, thus, for an arbitrary "-machine. Previous researchers often calculated pairwise correlation functions for particular realizations of stacking configurations (Berliner & Werner, 1986;Kabra & Pandey, 1988;Shrestha & Pandey, 1997;Estevez-Rams, Martinez et al, 2001;Varn et al, 2013a) or from analytic expressions constructed for particular models (Tiwary & Pandey, 2007;Estevez-Rams et al, 2008;Varn & Crutchfield, 2004). The techniques developed here, however, are the first generally applicable methods that do not rely on samples of a stacking sequence.…”