To gain a scientific understanding of the cross-system impact of coastal zones and promote the sustainable development and protection of coastal areas, we constructed a spatial benefit evaluation system that encompassed both terrestrial and marine systems, focusing on the ecological, economic, and social dimensions. We employed the entropy method, moving average method, and Mann-Kendall trend test to quantitatively characterize the spatial benefits of the coastal zone in Fujian Province, China, and the evolution of the marine climate from 2005 to 2020. Building on this, the grey relational analysis method was applied to investigate the correlation between spatial benefits and marine climate and to explore the trends and magnitude of the impact of marine climate on spatial benefits. During the study period, the spatial benefits of the coastal zone in Fujian Province exhibited a fluctuating pattern of an initial increase followed by a decrease, with spatial benefits varying among cities. The role of the economic system in enhancing spatial benefits was not considerable. Changes in the marine climate aligned with the global warming trend, with the most considerable changes observed in sea level and tropical cyclone frequency and intensity, which are sensitive to human activities. There was a high degree of correlation between coastal zone spatial benefits and marine climate, with seawater salinity being most closely related to spatial benefits, while tropical cyclones showed the weakest correlation. The results of this study support sustainable development efforts in coastal zones.