Phosphorylase kinase is a multimeric protein kinase (␣ 4  4 ␥ 4 ␦ 4 ) whose enzymatic activity is conferred by its ␥-subunit. A library of 18 overlapping synthetic peptides spanning residues 277-386 of the ␥-subunit has been prepared to use in identifying important regulatory structures in the protein. In the present study, the library was screened to identify regions that might function as autoinhibitory domains. Peptides from two distinct regions were found to inhibit the Ca 2؉ -activated holoenzyme. The same regions were previously found to bind calmodulin (i.e. the ␦-subunit; Dasgupta, M. Honeycutt, T., and Blumenthal, D. K. (1989) J. Biol. Chem. 264, 17156 -17163). The most potent substrate antagonist peptides were PhK13 (residues 302-326; K i ؍ 300 nM) and PhK5 (residues 342-366; K i ؍ 20 M). Both peptides inhibited the holoenzyme competitively with respect to phosphorylase b and noncompetitively with respect to Mg⅐ATP. When the pattern of inhibition with both peptides present was analyzed, inhibition was observed to be synergistic and modestly cooperative indicating that the two peptides can simultaneously occupy the protein substrate-binding site(s). These data are consistent with a model in which the regions of the ␥-subunit represented by PhK5 and PhK13 work in concert as regulatory subdomains that transduce Ca 2؉ -induced conformational changes in the ␦-subunit to the catalytic ␥-subunit through a pseudosubstrate autoinhibitory mechanism.Phosphorylase kinase is among the largest and most complex of the protein kinase superfamily (reviewed by Pickett-Gies and Walsh (1)). Because of its complex structure, the catalytic activity of phosphorylase kinase is sensitive to a variety of effectors and chemical modifications including pH, divalent metal ions, ionic strength and composition, glycogen, calmodulin, nucleosides, phosphorylation state, limited proteolysis, and substrate conformation. The subunit composition of phosphorylase kinase is ␣ 4  4 ␥ 4 ␦ 4 , where the ␣-, -, and ␦-subunits are regulatory and the ␥-subunit harbors the catalytic site. The ␣-and -subunits can be phosphorylated, and this modification increases the enzyme's catalytic activity, whereas the ␦-subunit is identical to calmodulin and confers Ca 2ϩ dependence to the enzyme's activity. Although the ␣-, -, and ␦-subunits are all thought to interact directly with the ␥-subunit, the molecular mechanisms by which these regulatory subunits effect changes in catalytic activity is not well understood at present.A common mechanism by which the catalytic activity of many protein kinases appears to be regulated is through a pseudosubstrate autoinhibitory mechanism (see reviews by Soderling (2) and Kemp and Pearson (3)). This intrasteric form of regulation was first described in the cAMP-dependent protein kinase, but there is now substantial evidence that this mechanism may also be operating in the cGMP-dependent protein kinases, myosin light chain kinases, calmodulin-dependent type II kinases, the protein kinase-Cs, as well as the protei...