Stenotrophomonas cyclobalanopsidis sp. nov., isolated from the leaf spot disease of Cyclobalanopsis patelliformis

Bian, Dan-Ran; Han, Xue; Piao, Chun‐gen; Li, Yong

doi:10.1007/s10482-020-01453-y

Cited by 12 publications

(8 citation statements)

References 18 publications

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“…In total, 18 zOTUs displayed an abundance above 1.0% in resTm samples. Molecular strains not described above are associated with the environment according to the literature (e.g., [ 37 , 38 , 39 ]).…”

Section: Resultsmentioning

confidence: 99%

“…are associated with the environment [ 47 , 48 ]; zOTU17 ( Variovorax paradoxus , 100% similarity), which was described to be associated with soil and water [ 49 ]; zOTU18 (Beijerinckiaceae, 97.7% similarity), a microorganism that so far was identified only at the family level (accession number PAC0001013); zOTU26 ( Methylobacterium haplocladii , 100% similarity), which was described to be associated with plants [ 50 ]; zOTU31 ( Sphingomonas desiccabilis , 98.0% similarity) that was published to be associated with soil crust [ 38 ]; and zOTU36 ( Stenotrophomonas lactitubi , 99.8% similarity), a bacterium that was isolated from surfaces with food contact [ 51 ], while other Stenotrophomonas spp. are associated with plants [ 39 ]. Further, zOTU42 ( Chryseobacterium lactis , 99.6% similarity) was described to be associated with milk [ 52 ], whereas other Chryseobacterium spp.…”

Section: Discussionmentioning

confidence: 99%

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Revealing the Tick Microbiome: Insights into Midgut and Salivary Gland Microbiota of Female Ixodes ricinus Ticks

Wiesinger¹,

Wenderlein²,

Ulrich³

et al. 2023

IJMS

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The ectoparasite Ixodes ricinus is an important vector for many tick-borne diseases (TBD) in the northern hemisphere, such as Lyme borreliosis, rickettsiosis, human granulocytic anaplasmosis, or tick-borne encephalitis virus. As climate change will lead to rising temperatures in the next years, we expect an increase in tick activity, tick population, and thus in the spread of TBD. Consequently, it has never been more critical to understand relationships within the microbial communities in ticks that might contribute to the tick’s fitness and the occurrence of TBD. Therefore, we analyzed the microbiota in different tick tissues such as midgut, salivary glands, and residual tick material, as well as the microbiota in complete Ixodes ricinus ticks using 16S rRNA gene amplicon sequencing. By using a newly developed DNA extraction protocol for tick tissue samples and a self-designed mock community, we were able to detect endosymbionts and pathogens that have been described in the literature previously. Further, this study displayed the usefulness of including a mock community during bioinformatic analysis to identify essential bacteria within the tick.

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Section: Resultsmentioning

confidence: 99%

Section: Discussionmentioning

confidence: 99%

Revealing the Tick Microbiome: Insights into Midgut and Salivary Gland Microbiota of Female Ixodes ricinus Ticks

Wiesinger¹,

Wenderlein²,

Ulrich³

et al. 2023

IJMS

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show abstract

“…This finding indicates the potential disease danger (i.e. leaf scorch disease) [ 55 ] in garlic with the long-term application of large amounts of inorganic NPK.…”

Section: Discussionmentioning

confidence: 97%

Comparison of bacterial and archaeal communities in two fertilizer doses and soil compartments under continuous cultivation system of garlic

et al. 2021

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Soil microbial communities are affected by interactions between agricultural management (e.g., fertilizer) and soil compartment, but few studies have considered combinations of these factors. We compared the microbial abundance, diversity and community structure in two fertilizer dose (high vs. low NPK) and soil compartment (rhizosphere vs. bulk soils) under 6-year fertilization regimes in a continuous garlic cropping system in China. The soil contents of NO3– and available K were significantly higher in bulk soil in the high-NPK. The 16S rRNA gene-based bacterial and archaeal abundances were positively affected by both the fertilizer dose and soil compartment, and were higher in the high-NPK fertilization and rhizosphere samples. High-NPK fertilization increased the Shannon index and decreased bacterial and archaeal richness, whereas the evenness was marginally positively affected by both the fertilizer dose and soil compartment. Soil compartment exerted a greater effect on the bacterial and archaeal community structure than did the fertilization dose, as demonstrated by both the nonmetric multidimensional scaling and redundancy analysis results. We found that rhizosphere effects significantly distinguished 12 dominant classes of bacterial and archaeal communities, whereas the fertilizer dose significantly identified four dominant classes. In particular, a Linear Effect Size analysis showed that some taxa, including Alphaproteobacteria, Rhizobiales, Xanthomonadaceae and Flavobacterium, were enriched in the garlic rhizosphere of the high-NPK fertilizer samples. Overall, the fertilizer dose interacted with soil compartment to shape the bacterial and archaeal community composition, abundance, and biodiversity in the garlic rhizosphere. These results provide an important basis for further understanding adaptive garlic-microbe feedback, reframing roots as a significant moderating influence in agricultural management and shaping the microbial community.

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“…Moreover, S. maltophilia PE591 was capable of inducing significant physicochemical changes in PE after a 90-day incubation, revealing its great potential for plastic biodegradation processes ( 1 ). The Stenotrophomonas genus currently comprises 20 species, and its first species, S. maltophilia , was described in 1993 ( 2 – 4 ). S. maltophilia is a Gram-negative, obligate aerobic, rod-shaped, and motile bacterium that is considered to be an important human pathogen ( 5 ).…”

Section: Announcementmentioning

confidence: 99%

Draft Genome Sequence of Stenotrophomonas maltophilia Strain PE591, a Polyethylene-Degrading Bacterium Isolated from Savanna Soil

Frederico

Peixoto

Sousa

et al. 2021

Microbiol Resour Announc

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Stenotrophomonas cyclobalanopsidis sp. nov., isolated from the leaf spot disease of Cyclobalanopsis patelliformis

Cited by 12 publications

References 18 publications

Revealing the Tick Microbiome: Insights into Midgut and Salivary Gland Microbiota of Female Ixodes ricinus Ticks

Revealing the Tick Microbiome: Insights into Midgut and Salivary Gland Microbiota of Female Ixodes ricinus Ticks

Comparison of bacterial and archaeal communities in two fertilizer doses and soil compartments under continuous cultivation system of garlic

Draft Genome Sequence of Stenotrophomonas maltophilia Strain PE591, a Polyethylene-Degrading Bacterium Isolated from Savanna Soil

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