We outline a surface scattering kernel for rarefied gas flows through ideally ordered nanomaterials, such as high aspect ratio carbon nanotubes. The derived model allows for a comparison of the tangential momentum accommodation coefficient, and, hence, the total effective friction, for different species of gases as a function of the particle diameter. This surface kernel is incorporated with a Fokker–Planck model as an approximation to transport of a rarefied gas through ideally ordered carbon nanotubes. The results of this analysis predict that H2 experiences higher friction in such systems in comparison with larger molecules such as CH4. The results are proposed as a potential explanation of the reduced gas transport of hydrogen gas in nanoporous systems.