Self-assembled chlorophyll a and pheophytin a systems in thin solid films have been studied by 2'52Cf plasma desorption mass spectrometry (PDMS). The 252Cf-PDMS spectra of these films show monomer cation and anion molecular ions, ions of molecular aggregates, and positive and negative ion fragmentation patterns arising from the loss of various aliphatic side chains from the chlorin ring. Chlorophyll a films cast from dry carbon tetrachloride solution, in which chlorophyll a is known to occur as the dimer, produced an abundant dimer ion. The highest degree of chlorophyll a self-assembly was observed in chlorophyll a films cast from n-octane solutions. Oligomer ions extending upwards in size to the heptamer were detected in this system.It has long been recognized that the optical properties of chlorophyll in vivo are anomalous (1). Relative to a solution of chlorophyll in a polar solvent such as pyridine or diethyl ether, an environment in which chlorophyll is known to exist predominantly as monomer (2), the main red absorption band of chlorophyll in vivo is both red-shifted and broadened. Both the absorption and emission spectra are significantly different (3). The discrepancies are most often attributed (i) to aggregation of the pigment molecules or (ii) to specific chlorophyll-protein interactions. Krasnovskii (4), Brody and Brody (5, 6), and others have suggested that chlorophyll occurs in various states of aggregation in vivo, and that interactions between the chlorophyll molecules in the various aggregates perturb the electronic states of the chromophores and, thus, become the primary source of the spectral anomalies in vivo. Whether there are specific chlorophyll-protein interactions that can generate spectral shifts in the absence of pigment chromophore-chromophore interactions is still an unresolved question.The nature of the various red-shifted chlorophyll systems that can readily be prepared in the laboratory thus becomes relevant to the state of chlorophyll in vivo. Organic compounds with large delocalized 7r electron systems (e.g., chlorophyll) experience nonspecific 7r-7r intermolecular attractive dispersion forces that result in aggregation. In addition, chlorophyll is now recognized to have coordination properties (7) particularly conducive to the formation both of chlorophyll-chlorophyll (endogamous) adducts (8), and chlorophyll-nucleophile (exogamous) aggregates (9). Nuclear magnetic resonance (10, 11) and infrared (12) spectroscopy show that the central magnesium atom of chlorophyll with coordination number 4 (as shown in Fig. 1) is coordinatively unsaturated. The Mg atom thus has a strong tendency to acquire electrons by filling one or both of its axial positions with nucleophilic ligands that have lone pairs of electrons. At the same time, the keto C=O function in ring V has been shown to be an excellent nucleophile (12, 13). The