Calpains constitute a family of intracellular Ca2؉ -regulated cysteine proteases that are indispensable in the regulation of a wide variety of cellular functions. The improper activation of calpain causes lethality or various disorders, such as muscular dystrophies and tumor formation. nCL-2/calpain 8 is predominantly expressed in the stomach, where it appears to be involved in membrane trafficking in the gastric surface mucus cells (pit cells). Although the primary structure of nCL-2 is quite similar to that of the ubiquitous m-calpain large subunit, the enzymatic properties of nCL-2 have never been reported. Here, to characterize nCL-2, the recombinant protein was prepared using an Escherichia coli expression system and purified to homogeneity. nCL-2 was stably produced as a soluble and active enzyme without the conventional calpain regulatory subunit (30K). Purified nCL-2 showed Ca 2؉ -dependent activity, with half-maximal activity at about 0.3 mM Ca 2؉ , similar to that of m-calpain, whereas its optimal pH and temperature were comparatively low. Immunoprecipitation analysis revealed that nCL-2 exists in both monomeric and homo-oligomeric forms, but not as a heterodimer with 30K or 30K-2, and that the oligomerization occurs through domains other than the 5EF-hand domain IV, most probably through domain III, suggesting a novel regulatory system for nCL-2.Calpain (Clan CA-C2, EC 3.4.22.17) is an intracellular Ca 2ϩ -regulated cysteine protease, comprising a superfamily with members in almost all eukaryotes and some bacteria (1-3). Calpains regulate a wide variety of cellular functions including the cell cycle, signal transduction, apoptosis, and membrane trafficking, through the limited proteolysis of their substrates (1, 2, 4, 5). Dysregulation of calpain activity and/or defective mutations in calpain genes cause lethality (6 -8) or a variety of pathological phenotypes, which include muscular dystrophies in mammals (9, 10), degeneration in the developing optic lobes of Drosophila (11), inadaptability to alkaline conditions in fungi and yeasts (12, 13), masculinization of nematode hermaphrodites (14), and defective aleurone cell development in maize (15). These observations clearly indicate calpain is indispensable physiologically; however, the specific physiological functions of calpains and the molecular mechanisms underlying their functions remain unclear.The mammalian calpain family comprises products from 14 independent genes, and can be classified into typical and atypical members according to their domain structures (2, 3). The ubiquitous -and m-calpains, well characterized typical calpains in mammals, are heterodimers composed of a distinct 80-kDa large catalytic subunit (abbreviated here to CL and mCL, respectively; also known as calpain 1 and 2) and a common 30-kDa small regulatory subunit (30K).2 The large and small subunits contain four (I-IV) and two (V and VI) domains, respectively: the regulatory N-terminal domain (I), the protease domain (II), the C2-domain-like Ca 2ϩ /phospholipid-binding domai...