Nitrous oxide (N 2 O) is an important greenhouse gas that is emitted from soil, but obtaining precise N 2 O source and sink strength estimates has been difficult due to high spatial and temporal flux variability and a poor understanding of the mechanisms controlling fluxes. Tools that improve our ability to quantify trace gas fluxes from soil and constrain annual budgets are therefore needed. Here we describe an improved chamber-based sampling system that continuously traps evolving soil gases onto molecular sieve thereby obtaining a single sample that integrates fluxes over extended periods (several weeks or more) and the use of stable isotopic methods to study microbial origins of N 2 O. We demonstrate that N 2 O can be trapped on molecular sieve within our chamber system with near 100% recovery and without isotopic fractionation. In field trials the site preference of N 2 O (the difference in d 15 N between the central and outer N atoms) varied between -6 and 14.4%, indicating that the majority of flux was derived from bacterial denitrification. Further development with automation would improve flux estimates by providing a system capable of capturing episodic flux events owing to long-term deployment. Further, an automated trapping chamber approach will also provide process-based understanding of N 2 O dynamics via stable isotopes and a new and affordable tool for evaluating the response of trace gas fluxes to land management practices.