aWe report the morphological changes on Ge surfaces upon 50 keV Ar + and 100 keV Kr + beam irradiation at 60°angle of incidence. The Ge surfaces having three different amorphous-crystalline (a/c) interfaces achieved by the pre-irradiation of 50 keV Ar + beam at 0°, 30°and 60°with a constant fluence of 5 × 10 16 ions/cm 2 were further processed by the same beam at higher fluences viz. 3 × 10 17 , 5 × 10 17 , 7 × 10 17 and 9 × 10 17 ions/cm 2 to understand the mechanism of nano-scale surface patterning. The Kr + beam irradiation was carried out only on three fresh Ge surfaces with ion fluences of 3 × 10 17 , 5 × 10 17 and 9 × 10 17 ions/cm 2 to compare the influence of projectile mass on surface patterning. Irrespective of the depth of a/c interface, the nanoscale surface patterning was completely missing on Ge surface with Ar + beam irradiation. However, the surface patterning was evidenced upon Kr + beam irradiation with similar ion fluences. The wavelength and the amplitude of the ripples were found to increase with increasing ion fluence. In the paper, the mass redistribution at a/c interface, the incompressible solid flow through amorphous layer, the angular distribution of sputtering/backscattering yields and the generation of non-uniform stress across the amorphous layer are discussed, particularly in analogy with low energy experiments, to get better understanding of the mechanism of nanoscale surface patterning by the ion beams.