In the pathogenic bacterium Chlamydia trachomatis, a transcriptional repressor, HrcA, regulates the major heat shock operons, dnaK and groE. Cellular stress causes a transient increase in transcription of these heat shock operons through relief of HrcA-mediated repression, but the pathway leading to derepression is unclear. Elevated temperature alone is not sufficient, and it is hypothesized that additional chlamydial factors play a role. We used DNA affinity chromatography to purify proteins that interact with HrcA in vivo and identified a higher-order complex consisting of HrcA, GroEL, and GroES. This endogenous HrcA complex migrated differently than recombinant HrcA, but the complex could be disrupted, releasing native HrcA that resembled recombinant HrcA. In in vitro assays, GroEL increased the ability of HrcA to bind to the CIRCE operator and to repress transcription. Other chlamydial heat shock proteins, including the two additional GroEL paralogs present in all chlamydial species, did not modulate HrcA activity.The heat shock response is a transient increase in the synthesis of heat shock proteins in response to cellular stressors, such as elevated temperature. These heat shock proteins are molecular chaperones and proteases that play an important role in preventing the accumulation of misfolded proteins. Increased synthesis of the heat shock proteins in response to stress occurs mainly at the transcriptional level, although other mechanisms are utilized by different organisms to achieve the same result (47). Many bacteria control the transcription of heat shock genes with a negative regulator, HrcA, and it is the relief of repression in response to heat shock that leads to increased expression levels (26, 38). While it is clear that derepression involves dissociation of HrcA from its cognate operator, CIRCE, the molecular details are unclear, and two competing models have been proposed. The models differ in whether HrcA-CIRCE binding is disrupted by the direct effects of elevated temperature (22,31,46) or indirectly through the actions of one or more factors that sense cellular stress. Particular attention has focused on the chaperonin GroE, which is itself regulated by HrcA (23,48).We are interested in the regulation of heat shock proteins in Chlamydia because of their long-recognized association with pathogenesis.