HCF164 is a membrane-anchored thioredoxin-like protein known to be indispensable for assembly of cytochrome b 6 f in the thylakoid membranes. In this study, we report the finding that chloroplast stroma m-type thioredoxin is the source of reducing equivalents for reduction of HCF164 in the thylakoid lumen, providing strong evidence that higher plant chloroplasts possess a trans-membrane reducing equivalent transfer system similar to that found in bacteria. To probe the function of HCF164 in the lumen, a screen to identify the reducing equivalent acceptor proteins of HCF164 was carried out by using a resin-immobilized HCF164 single cysteine mutant, leading to the isolation of putative target thylakoid proteins. Among the newly identified target proteins, the reduction of the PSI-N subunit of photosystem I by HCF164 was confirmed both in vitro and in isolated thylakoids. Two components of the cytochrome b 6 f complex, the cytochrome f and Rieske FeS proteins, were also identified as novel potential target proteins. The data presented here suggest that HCF164 serves as an important transducer of reducing equivalents to proteins in the thylakoid lumen.The redox state of higher plant chloroplasts undergoes significant fluctuations in both light and dark conditions. In the light, photosynthetic electron transport via ferredoxin and ferredoxin-NADP ϩ reductase (FNR) 2 results in the synthesis of NADPH, which is used as a source of reducing equivalents for carbon fixation. However, a portion of the electrons produced by the photosynthetic electron transport is transferred to thioredoxin (Trx) through ferredoxin and ferredoxin-thioredoxin reductase (1-3). The two stromal thioredoxin isoforms Trx-f and Trx-m were originally identified for this pathway (4, 5); they have been extensively characterized and are known to regulate the activity of a number of thiol enzymes by alteration of their redox state. Completion of the Arabidopsis genomic data base showed that higher plants possess a number of Trx isoforms in chloroplasts, mitochondria, and in the cytosol (6 -8), although their specific localization and function within these cellular compartments have yet to be determined (9, 10).In recent years, highly effective screening methods have been developed that have lead to the isolation of a large number and variety of higher plant Trx-target protein candidates (11)(12)(13)(14)(15)(16). This has allowed the characterization of a wide variety of previously unknown Trx-regulated enzymes in the chloroplast stroma, for example (6 -8, 12, 17, 18). In contrast, our knowledge of the thiol-disulfide redox control system in the thylakoid lumen has been limited so far (19). Meurer et al. identified mutants of Arabidopsis that displayed a high chlorophyll fluorescence phenotype (hcf mutants) under standard photosynthetic conditions (20, 21), suggesting a defect in photosynthetic electron transport. Among these, the hcf164 mutant was found to be impaired in the stable assembly of the cytochrome b 6 f complex within thylakoid membranes (22...