Bacteria with a dual flagellar system, which consists of a polar flagellum (PF) and several lateral flagella (LF), have been identified in diverse environments. Nevertheless, whether and how these two flagellar systems interact with each other is largely unknown. In the present study, the relationship between the structural genes for the PF and LF of the deep-sea bacterium Shewanella piezotolerans WP3 was investigated by genetic, phenotypic and phylogenetic analyses. The mutation of PF genes induced the expression of LF genes and the production of LF in liquid medium, while the defective LF genes led to a decrease in PF gene transcription. However, the level of PF flagellin remained unchanged in LF gene mutants. Further investigation showed that the flgH2 gene (encoding LF L-ring protein) can compensate for mutations of the flgH1 gene (encoding PF L-ring protein), but this compensation does not occur between the flagellar hook-filament junction proteins (FlgL1, FlgL2). Swarming motility was shown to specifically require LF genes, and PF genes cannot substitute for the LF genes in the lateral flagella synthesis. Considering the importance of flagella-dependent motility for bacterial survival in the abyssal sediment, our study thus provided a better understanding of the adaptation strategy of benthic bacteria.Flagella are the key organelles for bacterial locomotion and facilitate movement towards favourable conditions or away from detrimental environments 1,2 . Moreover, in various bacteria, such as Pseudomonas aeruginosa and Vibrio cholerae, flagella were shown to be involved in biofilm formation 3 . Although the number and distribution of flagella on the cell surface of bacteria varies among the different species, most flagella can be classified into two types, polar and lateral, depending on the arrangement of the flagella. Many bacteria such as P. aeruginosa and V. cholerae, possess a single polar flagellum (PF). However, some microorganisms can express multiple lateral flagella (LF), such as, Escherichia coli, Salmonella enterica and Proteus mirabilis 4 . Interestingly, a number of species, such as V. parahaemolyticus and Aeromonas hydrophila, have been shown to harbour dual flagellar systems 5 . In V. parahaemolyticus, the Na + -powered PF is used for swimming in liquid environments, and the H + -powered LF are utilized for swarming on solid surfaces or under high-viscosity conditions 5 . The PF is produced continuously, while an inducible flagellar system synthesizes LF under conditions that inhibit PF function 6 . As shown in V. parahaemolyticus, the PF and LF systems have several distinguishing characteristics and are under the control of independent regulatory hierarchies: the master regulators controlling PF and LF gene expression were reported as the σ 54 -dependent FlaK and the transcriptional activator LafK, respectively 5,6 .The motility and dual flagellar systems of the deep-sea bacterium Photobacterium profundum SS9 have been investigated and the gene mutants for the PF were shown to have impaired...