Hole transporting materials (HTMs) are imperative for promoting the development of perovskite solar cells (PSCs). Herein, three isomers of RQ4, RQ5, and RQ6 are constructed by methylthio (-SMe) group in the para, meta, and adjacent sites of terminal benzene on the side-chain of carbazole-arylamine derivatives based HTMs, and investigated by means of the theoretical simulation and experimental characterization. As a result of the theoretical simulation, the isomeric HTMs of RQ4-RQ6 exhibit appropriate highest occupied molecular orbital /lowest unoccupied molecular orbital energy levels and good optical properties. However, by comparison with RQ4 and RQ5, a better planar configuration and closer molecular stacking for RQ6 may be beneficial to promote the hole coupling, interface interaction, and charge transfer at perovskite/HTMs interface. In order to verify the accuracy of the theoretical model, the designed RQ4-RQ6 are synthesized to be used to assemble PSCs devices. In comparison to isomers RQ4 (20.07%) and RQ5 (18.18%) based devices, the RQ6 based devices has higher power conversion efficiency of 21.03% because of its high hole mobility, the film formation ability, and large charge transfer at perovskite/HTMs interface. The experimental results confirm the reliability of the theoretical simulation and provide an effective strategy to obtain potential HTMs through isomerization of side-chain functional groups.