2009
DOI: 10.1016/j.jsbmb.2009.02.003
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Structural variants of glucocorticoid receptor binding sites and different versions of positive glucocorticoid responsive elements: Analysis of GR-TRRD database

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Cited by 29 publications
(22 citation statements)
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“…Recently, studies have found that only half of GR binding sequences correspond to the GRE consensus sequence as inverted repeat of the exanucleotide TGTTCT. Indeed, 40% of GR binding sequences contain only the hexanucleotide and the majority of these genes are glucocorticoid-inducible genes (48). The active GRE within the regulatory regions of the Vdr gene we describe here contains the precise consensus sequence TGTTCT.…”
Section: Discussionmentioning
confidence: 91%
“…Recently, studies have found that only half of GR binding sequences correspond to the GRE consensus sequence as inverted repeat of the exanucleotide TGTTCT. Indeed, 40% of GR binding sequences contain only the hexanucleotide and the majority of these genes are glucocorticoid-inducible genes (48). The active GRE within the regulatory regions of the Vdr gene we describe here contains the precise consensus sequence TGTTCT.…”
Section: Discussionmentioning
confidence: 91%
“…In order to explain a direct genomic action of testosterone, an attempt was made to identify ARE on the promoter of the mouse OAT gene. We carried out an in silico search for homology to the consensus ARE motifs by selecting either the left half-site 5'-AGAACA-3' or the right half-site 5'-TGTTCT-3' motifs by search computational using MatInspector (http://www.genomatix.de/) (Beato et al, 1989;Fabre et al, 1994;Roche et al, 1992;Wang et al, 2007;Merkulov & Merkulova, 2009). Several ARE (5'-AGAACAnnnTGTTCT-3') and glucocorticoid responsive element (GRE, 5'-GGTACAnnnTGTTCT-3') which share the same sequence 5'-TGTTCT-3' (Nelson et al, 1999, Verrijdt et al, 2003 were identified on the promoter of the mouse OAT gene.…”
Section: Discussionmentioning
confidence: 99%
“…Not every site where GR specifically binds to the DNA represents a GRE. The binding sites for transcription factors on the DNA are regions whose affinity for the given protein are elevated because of specific nucleotide sequences that distinguish it from other regions (50). The GRbs found by Allgen Promo program within the IL-6-responsive element B (2146/288) of the Hp gene HRE have a typical hexanucleotide motif of a new variant of the palindromic nucleotide sequence G/AGnACAnnnTGTTCT.…”
Section: Discussionmentioning
confidence: 99%
“…Thereby, the binding of the GR monomer to the hexanucleotide motif is stabilized by another protein that possesses a binding site adjacent to the hexanucleotide (50). GRbs found within element C of the Hp gene HRE contain a hexanucleotide sequence (CAAACA) that slightly differs from the sequence found in element B (GGAACA).…”
Section: Discussionmentioning
confidence: 99%