The three-dimensional crystal structure of variant-3 toxin from the scorpion Centruroides sculpturatus Ewing has been determined at 3 A resolution. Phases were obtained by use of K2PtCL4 and K2IrCl derivatives. The most prominent secondary structural features are two and a half turns of a-helix and a three-strand stretch of antiparallel a-sheet, which runs parallel to the a-helix. The helix is connected to the middle strand of the a-sheet by two disulfide bridges; a third disulfide bridge is located nearby. Several loops extend out of this dense core of secondary structure. The largest loop is joined to the COOH terminus of the molecule by the fourth disulfide bridge. The overall shape of the molecule resembles a right-hand fist: the a-helix runs along the knuckles of the fist; the a-sheet lies along the second and third joints of the fingers; the thumb is defined by two short loops that are composed of residues 16-21 and residues 41-46; the wrist corresponds to the COOHterminal stretch of residues 52-65 and a loop composed of residues 5-14; and the second joint of the little finger is near the NH2 terminus of the molecule. The a-carbon backbone displays a large flat surface that lies along the second joints of the fingers and the heel of the hand in the fist model. Several of the conserved residues in the scorpion neurotoxins are clustered on this surface, which may play a role in interactions of scorpion toxins with sodium channels of excitable membranes. Scorpion venoms contain sets of small basic proteins that are responsible for the neurotoxic activities of the venoms. These toxins display considerable variations in amino acid composition, but they generally consist of 60-70 amino acids and are crosslinked by four disulfide bridges. The partial or complete primary structures of about 25 toxins, from several different species of scorpions, have been determined (1). The amino acid sequences display a number of common features, including the same general locations of the eight cysteine residues, similar disulfide bridging patterns, and the location of several invariant or conserved residues. Thus, the available chemical data suggest that all of the scorpion toxins probably have similar threedimensional structures.The general effects of whole venoms or purified toxins injected in mammals are those expected from the massive release of neurotransmitters induced by depolarization of the nerve endings (2-4). Despite structural similarities among the various scorpion toxins, these proteins display wide variations in activity (5, 6), and it is not clear if all of the scorpion toxins follow the same general mechanism of action (7). Several of the toxins have been shown to prolong the action potentials of excitable membranes by blocking the inactivation of sodium channels (8-10), an effect similar to that produced by sea anemone toxins (11). However, the scorpion toxin and sea anemone toxin binding sites appear to be distinct from those occupied by otherThe publication costs of this article were defrayed in par...