Heparan sulfate, one of the most abundant components of the cell surface and the extracellular matrix, is involved in a variety of biological processes such as growth factor signaling, cell adhesion, and enzymatic catalysis. The heparan sulfate chains have markedly heterogeneous structures in which distinct sequences of sulfate groups determine specific binding properties. Sulfation at each different position of heparan sulfate is catalyzed by distinct enzymes, sulfotransferases. In this study, we identified and characterized Drosophila heparan sulfate 6-O-sulfotransferase (dHS6ST). The deduced primary structure of dHS6ST exhibited several common features found in those of mammalian HS6STs. We confirmed that, when the protein encoded by the cDNA was expressed in COS-7 cells, it showed HS6ST activity. Whole mount in situ hybridization revealed highly specific expression of dHS6ST mRNA in embryonic tracheal cells. The spatial and temporal pattern of dHS6ST expression in these cells clearly resembles that of the Drosophila fibroblast growth factor (FGF) receptor, breathless (btl). RNA interference experiments demonstrated that reduced dHS6ST activity caused embryonic lethality and disruption of the primary branching of the tracheal system. These phenotypes were reminiscent of the defects observed in mutants of FGF signaling components. We also show that FGF-dependent mitogen-activated protein kinase activation is significantly reduced in dHS6ST double-stranded RNA-injected embryos. These findings indicate that dHS6ST is required for tracheal development in Drosophila and suggest the evolutionally conserved roles of 6-O-sulfated heparan sulfate in FGF signaling.Heparan sulfate proteoglycans are ubiquitously present on the cell surface and in the extracellular matrix and are known to be involved in a variety of biological phenomena, including cell proliferation, differentiation, cell adhesion, angiogenesis, blood coagulation, lipid metabolism, and viral and bacterial infections. These diverse mechanisms of action are achieved by interactions between the specific structures of heparan sulfate and the binding proteins. The backbone of heparan sulfate is a polysaccharide chain composed of alternating D-glucuronic acid (GlcA) and N-acetyl-D-glucosamine units, and some GlcA residues are converted into L-iduronic acids. The microheterogeneity of the heparan sulfate structures is mainly produced by the nonrandom introduction of N-, 2-O-, 6-O-, and 3-O-sulfate groups (1, 2). Thus, the biological functions of heparan sulfate proteoglycans are controlled by biosynthetic events, which define the fine structures of heparan sulfate.For many years, functional studies of structurally complex heparan sulfate have focused on vertebrate tissues and cultured cells. Recent studies, however, have shown that heparan sulfate is also found in simple model organisms such as Drosophila melanogaster and Caenorhabditis elegans (3). The structural features of heparan sulfate in Drosophila are similar to those found in vertebrates. In addition, t...