2013
DOI: 10.1007/s00775-013-1002-8
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Structure of the UreD–UreF–UreG–UreE complex in Helicobacter pylori: a model study

Abstract: The molecular details of the protein complex formed by UreD, UreF, UreG, and UreE, accessory proteins for urease activation in the carcinogenic bacterium Helicobacter pylori, have been elucidated using computational modeling. The calculated structure of the complex supports the hypothesis of UreF acting as a GTPase activation protein that facilitates GTP hydrolysis by UreG during urease maturation, and provides a rationale for the design of new drugs against infections by ureolytic bacterial pathogens.

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Cited by 17 publications
(10 citation statements)
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“…Previous modeling studies argued that UreF may serve as a GTPase-activating protein (GAP) based on sequence homology [41],[42]. Biagi et al generated a computational model of the UreE/UreG/UreF/UreH complex [42]. This model depicted UreG in an inverted orientation as compared to what was observed in the crystal structure of the UreG/UreF/UreH complex.…”
Section: Discussionmentioning
confidence: 99%
“…Previous modeling studies argued that UreF may serve as a GTPase-activating protein (GAP) based on sequence homology [41],[42]. Biagi et al generated a computational model of the UreE/UreG/UreF/UreH complex [42]. This model depicted UreG in an inverted orientation as compared to what was observed in the crystal structure of the UreG/UreF/UreH complex.…”
Section: Discussionmentioning
confidence: 99%
“…Although the interactions and mechanisms of action of these accessory proteins have been extensively studied and are known to be essential for urease maturation [30,5263], the direct binding of a metallochaperone complex to the target apo-enzyme has yet not been demonstrated, perhaps due to the transient nature of the complex. However, there is a crystal structure of the H. pylori (UreHFG) 2 complex [30] and the complex with UreE has been modelled [56] (Figure 3). …”
Section: Metallochaperonesmentioning
confidence: 99%
“…( B ) H. pylori urease metallochaperone complex of UreD ( light blue ), UreF ( green ) and UreG ( grey ) (4hi0), including dimeric UreE ( orange ; 3yn0) in an orientation described in a previously reported docking model [56]. ( C ) The trimer-of-trimers urease apoprotein (UreA, UreB, UreC; cyan , 4z42) from Yersinia enterocolitica either sequentially binds UreD, UreF and UreG or binds a preformed UreD 2 F 2 G 2 complex.…”
Section: Figurementioning
confidence: 99%
“…Using Tandem Affinity Purification, we isolated from H. pylori cells a complex comprising UreA-B and the complete activation complex UreH-UreF-UreG-UreE (Stingl et al, 2008). A computational model of this complex was recently proposed (Biagi et al, 2013). …”
Section: In Vivo Urease Activation and Accessory Protein Complexesmentioning
confidence: 99%