Glycopeptidolipids (GPLs) are major components present on the outer layers of the cell walls of several nontuberculous mycobacteria. GPLs are antigenic molecules and have variant oligosaccharides in mycobacteria such as Mycobacterium avium. In this study, we identified four genes (gtf1, gtf2, gtf3, and gtf4) in the genome of Mycobacterium smegmatis. These genes were independently inactivated by homologous recombination in M. smegmatis, and the structures of GPLs from each gene disruptant were analyzed. Thin-layer chromatography, gas chromatography-mass spectrometry, and matrix-assisted laser desorption ionization-time-of-flight mass spectrometry analyses revealed that the mutants ⌬gtf1 and ⌬gtf2 accumulated the fatty acyl-tetrapeptide core having O-methyl-rhamnose and 6-deoxy-talose as sugar residues, respectively. The mutant ⌬gtf4 possessed the same GPLs as the wild type, whereas the mutant ⌬gtf3 lacked two minor GPLs, consisting of 3-O-methylrhamnose attached to O-methyl-rhamnose of the fatty acyl-tetrapeptide core. These results indicate that the gtf1 and gtf2 genes are responsible for the early glycosylation steps of GPL biosynthesis and the gtf3 gene is involved in transferring a rhamnose residue not to 6-deoxy-talose but to an O-methyl-rhamnose residue. Moreover, a complementation experiment showed that M. avium gtfA and gtfB, which are deduced glycosyltransferase genes of GPL biosynthesis, restore complete GPL production in the mutants ⌬gtf1 and ⌬gtf2, respectively. Our findings propose that both M. smegmatis and M. avium have the common glycosylation pathway in the early steps of GPL biosynthesis but differ at the later stages.The mycobacterial cell envelope has a unique structure that contains a complex of covalently linked peptidoglycan, arabinogalactan, and mycolic acids (7, 11). The outer layer of the cell envelope is composed of several types of glycolipids that affect the surface properties of mycobacterial cells (7, 11). Glycopeptidolipids (GPLs) are a major class of glycolipid present on the outer layer of several species of nontuberculous mycobacteria, such as Mycobacterium avium complex, M. scrofulaceum, M. chelonae, M. fortuitum, and M. smegmatis (31). GPLs have a common fatty acyl-tetrapeptide core consisting of tetrapeptide amino alcohol (D-Phe-D-allo-Thr-D-Ala-L-alaninol) and amide-linked long-chain fatty acid (C 26-34 ). The fatty acyl-tetrapeptide core is glycosylated with 6-deoxytalose (6-d-Tal) and variable O-methyl-rhamnose (O-Me-Rha) residues, termed non-serovar-specific GPLs (nsGPLs), which are also the main products of M. smegmatis GPLs (1, 4, 10). The GPLs of M. avium have a more complicated structure, in which an additional Rha residue is added to 6-d-Tal of nsGPLs to be extended with various haptenic oligosaccharides, which are important surface antigens, resulting in serovar-specific GPLs (ssGPLs) (1, 4, 31).There are some evidences that GPLs may be responsible for pathogenicity. It has been shown that the some of the ssGPLs are immunosuppressive and are able to induce a variet...