Yeast and human glycosylphosphatidylinositol (GPI) precursors differ in the extent to which a fourth mannose is present as a side branch of the third core mannose. A fourth mannose addition to GPIs has scarcely been detected in studies of mammalian GPI synthesis but is an essential step in the Saccharomyces cerevisiae pathway. We report that human SMP3 encodes a functional homolog of the yeast Smp3 GPI fourth mannosyltransferase. Expression of hSMP3 in yeast complements growth and biochemical defects of smp3 mutants and permits in vivo mannosylation of trimannosyl (Man 3 )-GPIs. Immunolocalization shows that hSmp3p resides in the endoplasmic reticulum in human cells. Northern analysis of mRNA from human tissues and cell lines indicates that hSMP3 is expressed in most tissues, with the highest levels in brain and colon, but its mRNA is nearly absent from cultured human cell lines. Correspondingly, increasing expression of hSMP3 in cultured HeLa cells causes abundant formation of three putative tetramannosyl (Man 4 )-GPIs. Our data indicate that hSmp3p functions as a mannosyltransferase that adds a fourth mannose to certain Man 3 -GPIs during biosynthesis of the human GPI precursor, and suggest it may do so in a tissue-specific manner.Glycosylphosphatidylinositols (GPIs) 1 are essential glycolipids synthesized by all eukaryotes. Many GPIs become covalently attached to the carboxyl termini of various secretory proteins and serve to anchor them to the exterior face of the plasma membrane (1, 2). Others remain protein-free and are distributed in the membranes of major cellular organelles and the plasma membrane (3, 4). GPIs are synthesized in the endoplasmic reticulum (ER) by stepwise addition of components to phosphatidylinositol. The end product of GPI synthesis is a "complete precursor" (5) that is substrate for the GPI transamidase complex that attaches it to proteins. Many of the steps and enzymes of GPI precursor assembly are conserved between humans and Saccharomyces cerevisiae and produce precursors with a common core structure of EthN-PO 4 -6Man␣1,2Man␣1,6Man␣1,4GlcN␣1,6Ins-PO 4 -lipid. In both pathways, the glycan portion of the GPI may be modified further with side branching ethanolamine phosphate (EthN-P) moieties on the first and second mannoses (6 -19).A notable difference in GPI structure between yeast and mammals is the extent to which a fourth mannose (Man-4) is present as a ␣1,2-linked side branch of the third mannose (Man-3). In S. cerevisiae, late stage intermediates in GPI precursor synthesis (17, 19 -21), the presumed GPI transamidase substrates (5), and protein-bound GPIs (22) all contain four mannoses. Addition of Man-4 to trimannosyl-GPIs (Man 3 -GPIs) by the essential Smp3 mannosyltransferase is a mandatory step in yeast GPI precursor assembly which precedes the addition of the terminal EthN-P to Man-3 through which the GPI is ultimately attached to protein (23). Thus, it is probable that all yeast GPI transamidase substrates bear four mannoses. Conversely, studies of the synthesis of mammal...