SummaryThe expanding aquaculture industry plays an important role in feeding the growing human population and with the expansion, sustainable bacterial disease control, such as probiotics, becomes increasingly important. Tropodithietic acid (TDA)âproducing Phaeobacter spp. can protect live feed, for example rotifers and Artemia as well as larvae of turbot and cod against pathogenic vibrios. Here, we show that the emerging live feed, copepods, is unaffected by colonization of the fish pathogen Vibrio anguillarum, making them potential infection vectors. However, TDAâproducing Phaeobacter inhibens was able to significantly inhibit V. anguillarum in nonâaxenic cultures of copepod Acartia tonsa and the copepod feed Rhodomonas salina. Vibrio grew to 106 CFU mlâ1 and 107 CFU mlâ1 in copepod and R. salina cultures, respectively. However, vibrio counts remained at the inoculum level (104 CFU mlâ1) when P. inhibens was also added. We further developed a semiâstrainâspecific qPCR for V. anguillarum to detect and quantify the pathogen in nonâaxenic systems. In conclusion, P. inhibens efficiently inhibits the fish larval pathogen V. anguillarum in the emerging live feed, copepods, supporting its use as a probiotic in aquaculture. Furthermore, qPCR provides an effective method for detecting vibrio pathogens in complex nonâaxenic live feed systems.