Yeast-mitochondria1 methionyl-tRNA synthetase was purified 1060-fold from mitochondrial matrix proteins of Saccharomyces cerevisiae using a four-step procedure based on affinity chromatography (heparin-Ultrogel, tRNAMe'-Sepharose, Agarose-hexyl-AMP) to yield a single polypeptide of high specific activity (1800 U/mg). Like the cytoplasmic methionyl-tRNA synthetase ( M , 85 000), the mitochondrial isoenzyme is a monomer, but of significantly smaller polypeptide size ( M , 65 000). In contrast, the corresponding enzyme of Escherichia coli is a dimer (Mr 152000) made up of identical subunits. The measured affinity constants of the purified mitochondrial enzyme for methionine and tRNA'" are similar to those of the cytoplasmic isoenzyme. However, the two yeast enzymes exhibit clearly different patterns of aminoacylation of heterologous yeast and E. coli tRNAMe'. Furthermore, polyclonal antibodies raised against the two proteins did not show any cross-reactivity by inhibition of enzymatic activity and by the highly sensitive immunoblotting technique, indicating that the two enzymes share little, if any, common antigenic determinants. Taken together, our results further support the belief that the yeast mitochondrial and cytoplasmic methionyl-tRNA synthetases are different proteins coded for by two distinct nuclear genes.Like the yeast cytoplasmic aminoacyl-tRNA synthetases, the mitochondrial enzymes displayed affinity for immobilized heparin. This distinguishes them from the corresponding enzymes of E. coli. Such an unexpected property of the mitochondrial enzymes suggests that they have acquired during evolution a domain for binding to negatively charged cellular components.The components of the yeast mitochondrial translation apparatus are of dual origin. While the mitochondrial (mt) DNA codes for a complete set of transfer RNAs and the 15s and 21s ribosomal RNAs, the proteins required for mitochondrial protein synthesis such as the ribosomal proteins, the aminoacyl-tRNA synthetases, and the translation factors are coded for by nuclear genes. The sole exception is the ribosomal protein varl which is encoded by the mt DNA (for reviews, see [l, 21).Aminoacyl-tRNA synthetases constitute a divergent family of enzymes differing in size and subunit structure but catalyzing the same reaction, the selective attachment of amino acids to their cognate tRNAs. The molecular and catalytic properties of these enzymes have been extensively studied over the past 20 years [3, 41. However, information about mitochondrial aminoacyl-t RNA synthetases remained scarce until recently. Previous studies on phenylalanyl-, leucyl-, and methionyl-tRNA synthetases from yeast mitochondria and cytoplasm indicated that the two isoenzymes exhibit distinctive properties [5 -71. By contrast, no significant differences could be observed between the mitochondrial and cytoplasmic valyl-tRNA synthetases IS]. Recently, cloning and molecular analysis of genes coding for mitochondrial aminoacyl-tRNA synthetases revealed the existence of two classes of nuclea...