Plant secondary metabolites, and specifically phenolics, play important roles when plants interact with their environment and can act as weapons or positive signals during biotic interactions. One such interaction, the establishment of mutualistic nitrogen-fixing symbioses, typically involves phenolic-based recognition mechanisms between host plants and bacterial symbionts during the early stages of interaction. While these mechanisms are well studied in the rhizobia-legume symbiosis, little is known about the role of plant phenolics in the symbiosis between actinorhizal plants and Frankia genus strains. In this study, the responsiveness of Frankia strains to plant phenolics was correlated with their symbiotic compatibility. We used Myrica gale, a host species with narrow symbiont specificity, and a set of compatible and noncompatible Frankia strains. M. gale fruit exudate phenolics were extracted, and 8 dominant molecules were purified and identified as flavonoids by high-resolution spectroscopic techniques. Total fruit exudates, along with two purified dihydrochalcone molecules, induced modifications of bacterial growth and nitrogen fixation according to the symbiotic specificity of strains, enhancing compatible strains and inhibiting incompatible ones. Candidate genes involved in these effects were identified by a global transcriptomic approach using ACN14a strain whole-genome microarrays. Fruit exudates induced differential expression of 22 genes involved mostly in oxidative stress response and drug resistance, along with the overexpression of a whiB transcriptional regulator. This work provides evidence for the involvement of plant secondary metabolites in determining symbiotic specificity and expands our understanding of the mechanisms, leading to the establishment of actinorhizal symbioses.Over the course of evolution, plants have developed many strategies to adapt to their environment and manage their biotic interactions. The production of secondary metabolites is an important tool in many of these strategies. In particular, secondary metabolites are involved in plant-microbe interactions both as weapons in plant defense mechanisms and as early signals in mutualistic as well as pathogenic relationships (22). For example, sesquiterpenes and flavonoids are involved in the early steps of arbuscular mycorrhizal symbiosis (1, 62). Similarly, in the early stages of the rhizobia-legume symbiosis, recognition of host flavonoids enhances rhizospheric competitiveness and root colonization and is the basic mechanism through which rhizobia induce the transcription of nod genes, leading to root hair deformation and nodulation in the plant tissues (13,49,55).Actinorhizal symbiosis is a less well-known nitrogen-fixing interaction, resulting from the association between the actinobacterium Frankia and plants belonging to eight dicotyledonous families collectively called "actinorhizal": Betulaceae, Myricaceae, Rosaceae, Datiscaceae, Elaeagnaceae, Coriariaceae, Casuarinaceae, and Rhamnaceae (8). Due to the nitrogen-fixing...