Factors modulating introgressive hybridization between the red mangrove species Rhizophora mangle and R. racemosa in spatially defined sites are poorly understood. To investigate this, we evaluated the reproductive phenology and the nutrient and physiological traits in those two species and their F 1 hybrids genotyped with microsatellite data across a natural hybrid zone from the Pacific coast of Panama. We found no evidence that reproductive phenology represents a barrier to gene flow, because R. mangle and the F 1 hybrids produced flowers and propagules throughout the annual cycle, while R. racemosa flowered only in the dry season. Soil nutrient concentrations decreased landward, while soil salinity varied only slightly. Foliar nutrients and d 15 N signatures varied according to the soil nutrient gradient, but only foliar phosphorus and carbon varied among species. In contrast, two structural variables (height and trunk diameter) and leaf variables related to salinity tolerance (Na, Cl:Na, K:Na, cation:anion) and water-use efficiency (i.e., d13 C) differed among species, suggesting higher salinity tolerance for R. mangle and F 1 hybrids compared with R. racemosa. We conclude that parental species and F 1 hybrids differ in salinity tolerance and water-use efficiency, which could be associated with adaptive evolution of the red mangrove hybrid complex.