It was demonstrated previously that the synthesis of small nuclear RNA (snRNA) species Ut and U2 in human cells is very sensitive to UV radiation. In the present work, the UV sensitivity of U3, U4, and U5 snRNA synthesis is shown to be also high. The synthesis of Ut, U2, U3, U4, and U5 snRNAs progressively decreased during the first 2 h after UV irradiation (this was not observed in polyadenylated RNA) and had not returned to normal rates 6 h after UV exposure. In contrast, the restoration of 5.8S rRNA synthesis began immediately after UV irradiation and was essentially complete 6 h later. A small fraction of Ut and U5 (and possibly U2 and U3) snRNA synthesis remained unaffected by high UV doses, when cell radiolabeling began 10 min after UV irradiation. The present data suggest that a factor other than the level of pyrimidine dimers in DNA (possibly, steps in the post-irradiation DNA repair process) plays an important role in the mechanism of UV-induced inhibition of U1-U5 snRNA synthesis.UV radiation causes random formation of pyrimidine dimers in DNA, which result in premature termination of transcription (23). This effect has been used to determine the length of transcription units, since the probability of causing a UV lesion within a transcription unit is directly proportional to its length. Human Ut and U2 small nuclear RNA (snRNA) synthesis is very sensitive to UV radiation (4), suggesting that the UV target sizes of Ut and U2 snRNAs are much larger than those of the known precursors to these snRNAs (5). In contrast, the synthesis of small RNAs whose primary transcripts are not much longer than those of the mature species, like 4S and 5S RNA, is not affected by the same dose range of UV radiation (4, 8). Mammalian snRNA species Ul, U2, U3, U4, and U5 share several common properties, including having N2,N2,7-trimethylguanosinecapped structures at their 5' ends (3) and possibly being synthesized by RNA polymerase II (5, 7, 9, 12, 21, 22; S. C. Chandrasekharappa, J. H. Smith, and G. L. Eliceiri, J. Cell. Physiol., in press). The original goal of the present work was to determine whether U3, U4, and U5 snRNA synthesis is also sensitive to UV radiation; our results show that it is. Ul through U5 snRNA synthesis decreases during the first 2 h after UV irradiation and is not restored to normal levels for at least 6 h after UV exposure. These results t Present address: Cancer Research Laboratory, University of Western Ontario, London, Ontario, Canada N6A SB7.suggest that a factor other than the pyrimidine dimer content of DNA is important in the UV inhibition of U1-U5 snRNA synthesis.MATERIALS AND METHODS KB or HeLa (human) cells, grown in spinner culture, were exposed to UV light as described earlier (at 15 cm from a GE G2578 lamp) (4). After specified times in spinner culture at 37°C, the cells were labeled with [3H]uridine (40 p.Ci/ml) for 40 min, except for the experiment in Fig. 1 and 2 where labeling was for 80 min. The radioactive medium was removed, and the cells were incubated for 2 h in fresh medium su...