The focus of this paper is the inclusion of aeroelastic constraints in the conceptual design loop for conventional and unconventional aircraft design. For configurations like the strut-braced wing, aeroelastic (flutter) instability is a major problem, and the inclusion of aeroelastic constraints early in the conceptual design phase is essential in order to ensure that the design obtained is flight safe. In this paper, we first describe the design tools and their development for performing aeroelastic calculations (static,gust and flutter). The paper then describes a multi-fidelity approach to obtain accurate, yet inexpensive, aeroelastic predictions including flutter speeds. Finally, these aeroelastic predictions are included in the design loop as constraints for the design and optimization of a strut-braced wing configuration.