H pylori is a spiral gram negative microaerophilic bacterium that infects the human gastric mucosa and is associated with gastritis, gastroduodenal ulcer disease, gastric carcinoma and mucosal associated lymphoid tissue lymphoma [1,2] . The prevalence of H pylori is high in developing countries. A recent study revealed an early colonization/infection of infants with H pylori and a prevalence of 67% at 9 mo of age in a peri-urban community in Karachi, Pakistan [3] . H pylori serology was positive in 58% of our general population in a previous study but is likely to actually be higher [4] . Currently, several diagnostic tests of varying sensitivity and specificity are available for determining the presence of H pylori, which include rapid urease test (RUT), histology, culture, urea breath test (UBT), and serology. Isolation of H pylori from gastric biopsy specimens constitutes the most specific way to establish the diagnosis of infection and to study the genotype of the infecting strains, however, it is a time consuming process. RUT and histology are still commonly used for the diagnosis of H pylori infection in our country as other modalities of H pylori testing, such as UBT and facilities for H pylori stool antigen tests, are not widely available.In Pakistan, self-prescription is common and medications are available over the counter without prescriptions [5] . It is known that acid reducing drugs; e.g, proton pump inhibitor (PPI), histamine-2 receptor blocker (H2RB), antibiotics and bismuth compounds reduce the sensitivity and specificity of the diagnostic tests for H pylori [6,7] . In our previous studies, we demonstrated that histology is comparatively less affected by PPI than RUT [8,9] . Polymerase chain reaction (PCR) is a highly