A 26-year-old woman diagnosed with congenital heart disease was admitted to our hospital with exertional dyspnea, cyanotic complexion, and bilateral lower limb edema. All tests revealed isolated severe right ventricular (RV) hypertrophy. She was in poor condition, with a diminishing chance for routine surgery, so she was scheduled for orthotopic homologous heart transplantation. After the surgery, isolated severe RV hypertrophic cardiomyopathy (RV HCM) was confirmed histologically and pathologically. After the surgery, the patient's cardiac function was normal. Exertional dyspnea, cyanotic complexion and bilateral lower limb edema all improved postoperatively.