2016
DOI: 10.1038/ncomms12629
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Super-resolution microscopy reveals a preformed NEMO lattice structure that is collapsed in incontinentia pigmenti

Abstract: The NF-κB pathway has critical roles in cancer, immunity and inflammatory responses. Understanding the mechanism(s) by which mutations in genes involved in the pathway cause disease has provided valuable insight into its regulation, yet many aspects remain unexplained. Several lines of evidence have led to the hypothesis that the regulatory/sensor protein NEMO acts as a biological binary switch. This hypothesis depends on the formation of a higher-order structure, which has yet to be identified using tradition… Show more

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Cited by 25 publications
(34 citation statements)
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“…The primary functional unit of the IKK complex is a constitutive, noncovalently linked dimer of NEMO associated with a homo-or heterodimer of IKK/. In resting cells, these minimal functional units are organized into higher-order latticelike structures through direct interactions and the binding of NEMO to ubiquitin chains (9). In response to proinflammatory stimuli, these lattice-like structures are reorganized into condensed supramolecular complexes that promote activation of IKK/ by phosphorylation (9,10).…”
Section: Introductionmentioning
confidence: 99%
“…The primary functional unit of the IKK complex is a constitutive, noncovalently linked dimer of NEMO associated with a homo-or heterodimer of IKK/. In resting cells, these minimal functional units are organized into higher-order latticelike structures through direct interactions and the binding of NEMO to ubiquitin chains (9). In response to proinflammatory stimuli, these lattice-like structures are reorganized into condensed supramolecular complexes that promote activation of IKK/ by phosphorylation (9,10).…”
Section: Introductionmentioning
confidence: 99%
“…The precise sequence of molecular events involved in IKK activation remain to be fully determined. However, recent evidence for higher-order IKK complexes [ 10 ], combined with X-ray crystal structures of IKKβ dimers in catalytically active conformations [ 6 ], has led to the proposal of a model for IKK activation involving oligomerization-mediated trans-autophosphorylation of IKK subunits. Indeed, in the case of IKKβ activation downstream of IL-1 and TNFα in mouse embryonic fibroblasts (MEFs) and TLR ligands in macrophages, TAK1 has been proposed to phosphorylate IKKβ at S177, which primes subsequent IKKβ-catalysed autophosphorylation of S181 [ 11 ].…”
Section: Introductionmentioning
confidence: 99%
“…If carefully balanced, usability of a biomolecular modeling package does not have to be at the expense of modeling power. With CCBuilder, our focus on usability has enabled scores of research scientists, many of whom are nonexpert in atomistic modeling, to produce highly accurate models of coiled coils that can be used for a range of real‐world applications …”
Section: Discussionmentioning
confidence: 99%
“…In a similar vein to Crick's original motivation to parameterize the α‐helical coiled coil, we routinely use models generated by CCBuilder to phase X‐Ray crystal structure data during molecular replacement . Similarly, others have used models generated with CCBuilder to fit SAXs data or model electron microscopy data . Various natural coiled‐coil sequences, with unknown structures, have been analyzed using models produced by CCBuilder: models have been used to predict of the sequence register of the heptad repeat; to probe the interaction energy of putative interfaces; and to calculate electrostatic surface potentials .…”
Section: Ccbuildermentioning
confidence: 99%