Damage to the mitochondrial genome (mtDNA) can lead to diseases for which there are no clearly effective treatments. Since mitochondrial function and biogenesis are controlled by the nutrient environment of the cell, it is possible that perturbation of conserved, nutrient-sensing pathways may successfully treat mitochondrial disease. We found that restricting glucose or otherwise reducing the activity of the protein kinase A (PKA) pathway can lead to improved fitness for Saccharomyces cerevisiae cells lacking mtDNA, and the transcriptional response to mtDNA loss is reduced in cells with diminished PKA activity. We have excluded many pathways and proteins from being individually responsible for the benefits provided by PKA inhibition to cells lacking mtDNA, and we found that robust import of mitochondrial polytopic membrane proteins may be required in order for cells without mtDNA to receive the full benefits of PKA reduction. Finally, we have discovered that the transcription of genes involved in arginine biosynthesis and aromatic amino acid catabolism is altered after mtDNA damage. Our results highlight the potential importance of nutrient detection and availability on the outcome of mitochondrial dysfunction.we asked whether any individual isoform of PKA might play a specific role in determining the outcome of mtDNA loss. Tpk1p, Tpk2p, and Tpk3p are the three PKA isoforms encoded by S. cerevisiae [28]. All three proteins act redundantly to allow cell proliferation, since tpk1∆ tpk2∆ tpk3∆ cells are normally inviable [32]. However, it is likely that each PKA isoform controls divergent cellular processes by phosphorylating its own specific set of target proteins [28,33]. We found that single deletion of Tpk3p increased the proliferation of ρcells (Fig. 1B). Deletion of the other PKA catalytic subunits, either singly or in combination, did not benefit cells lacking mtDNA.Interestingly, deletion of either Tpk1p or, more prominently, Tpk2p decreased the proliferation rate of tpk3∆ ρcells, potentially suggesting a complex relationship between the PKA isoforms in which one PKA isoform might act upstream of another isoform in order to enact a signaling outcome.
"PKA activity is promoted by Gpr1p, a G-protein coupled receptor, and Gpa2p, an associated G-protein α subunit [28,34]. We asked whether deletion of Gpr1p or Gpa2p would improve the fitness of ρcells. Both gpr1∆ ρand gpa2∆ ρcells proliferated more rapidly than isogenic WT ρcells (Fig. 1C), further supporting a role for PKA activity in decreasing the fitness of cells lacking mtDNA. ρcells lacking Tpk3p proliferate more slowly than gpr1∆ ρcells and gpa2∆ ρcells. This finding may suggest complex control of PKA isoforms by Gpr1p and Gpa2p beyond what is accessible by experiments using single and double Tpk deletion mutants. Alternatively this result may support an additional function for Gpr1p/Gpa2p outside of its role within the PKA pathway that is detrimental to proliferation of ρcells.
Glucose restriction benefits cells lacking mitochondrial DNA" Since a reductio...