Tuberculosis (TB) remains a significant global health problem for which rapid diagnosis is critical to both treatment and control. This report describes a multiplex PCR method, the Mycobacterial IDentification and Drug Resistance Screen (MID-DRS) assay, which allows identification of members of the Mycobacterium tuberculosis complex (MTBC) and the simultaneous amplification of targets for sequencing-based drug resistance screening of rifampin-resistant (rifampin r ), isoniazid r , and pyrazinamide r TB. Additionally, the same multiplex reaction amplifies a specific 16S rRNA gene target for rapid identification of M. avium complex (MAC) and a region of the heat shock protein 65 gene (hsp65) for further DNA sequencing-based confirmation or identification of other mycobacterial species. Comparison of preliminary results generated with MID-DRS versus culturebased methods for a total of 188 bacterial isolates demonstrated MID-DRS sensitivity and specificity as 100% and 96.8% for MTBC identification; 100% and 98.3% for MAC identification; 97.4% and 98.7% for rifampin r TB identification; 60.6% and 100% for isoniazid r TB identification; and 75.0% and 98.1% for pyrazinamide r TB identification. The performance of the MID-DRS was also tested on acid-fast-bacterium (AFB)-positive clinical specimens, resulting in sensitivity and specificity of 100% and 78.6% for detection of MTBC and 100% and 97.8% for detection of MAC. In conclusion, use of the MID-DRS reduces the time necessary for initial identification and drug resistance screening of TB specimens to as little as 2 days. Since all targets needed for completing the assay are included in a single PCR amplification step, assay costs, preparation time, and risks due to user errors are also reduced.T he diagnosis and control of tuberculosis (TB) is a very significant problem in global health. A recent report by the World Health Organization (WHO) estimates that Mycobacterium tuberculosis, the causative agent of the disease, has infected one-third of the world's population (71). TB can persist in a latent state within infected individuals for decades (69). Progression to active disease occurs in approximately 5% to 10% of immunocompetent individuals and triggers the frequent cough that enables the organism to be transmitted (11). Moreover, effective treatment of patients with active TB has become more difficult with the increasing prevalence of multidrug-resistant (MDR) strains (7, 70). MDR-TB is resistant to both of the first-line drugs rifampin (RIF) and isoniazid (INH) (8). MDR-TB cases have been estimated to account for one in four new TB cases in some parts of the world (70). In the United States, MDR-TB cases comprise approximately 1.1% of new TB cases, with the majority of these cases imported from regions where the disease is endemic.All members of the M. tuberculosis complex (MTBC) are capable of causing pulmonary disease, and early diagnosis is the most effective means of TB control. Culture-based identification remains the gold standard method for TB diagnosis (1...